This course will be offered again in in Fall 2022. The course will be somewhat similar to the Spring 2022 course (which you can explore here, including the Syllabus and Schedule, but with some changes based on what we learned last spring and new versions of these will be posted soon.
The Fall 2022 course is scheduled for Tuesdays and Thursdays, 12:30-1:45pm in Olsson Hall 120.
Here are final projects with public websites available.
Meghan Anderson, Kathia Crawford, Izzy Shehan, Visualizing and Understanding Olfaction [Github Repo]
Presentation
Jason Calem, Will Pemble, Gabriel Silliman, Cooper Scher, DNA Profiling with Incomplete Databases Presentation
Yanjin Chen, Gene network analysis
Marvin Cheng, Computer Vision and Human Vision Github
Brenna Courtney, On Christian Bök’s The Xenotext (Book 1) Wikipedia Page
Colin Crowe, The Mystery of Chargaff’s Second Parity Rule Presentation)
Joshua Devine, Ian Switzer, Ronith Ranjan, DNA File Compression Analysis
Presentation: New DNA/RNA/Amino Acid File Formats with Biopython Support and a Standalone Python Library
Standalone Library
BioPython Fork and Pull Request
Ethan Gahm, Peptide Sequencing: A New Project for Computational Biology Students
Davis Garwood, Kevin Wen, Identifying Genes in DNA Sequences
Jacob Hilliard, MRI Data Pipeline Builder Presentation
Ho Yeon Jeong, Pawan Jayakumar, A Survey of CRISPR and its Newest Variations and Applications
Sion Kim, The Rise of the Direct-to-Consumer Genetic Testing Market
Presentation
Justin Ngo, Emily Franklin, The Ethics of Gene Editing on Intellectual Disability Presentation
Neil Phan, Alip Arslan, Emil Diaz, Evolve: Simulating Evolution with Neural Networks Presentation
Mohit Srivastav, Fractal Evolution of Gene Promoter Networks Using Aggregation Presentation
Yuchen Sun, Nafisa Amrula, SARS-CoV-2 Sequence Analysis Presentation
Each team will have an opportunity to present your project to the class on either Wednesday, 27 April or Monday, 2 May. You will have 5 minutes maximum for your presentation (which will need to be enforced strictly to be able to complete all the presentations within the schedule class period). It is fine if your presentation is shorter (which might even allow time for questions), but you should keep the time limit in mind in planning your presentation.
Teams presenting should submit your slides as either a PDF file, a link to a (publicly-visible) URL, or a PowerPoint file by sending a slack message in your team channel to me no later than 10:29am on the date of your presentation.
Our guest speaker today was Kristen Naegle, Professor of Biomedical Engineering. Her slides are here: Computational Biology: Ensembles of Trees.